Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(22)  |  Call(14)  |  Derive(0)  |  Import(8)

src/b/i/biopython-1.63/Bio/PDB/HSExposure.py   biopython(Download)
from Bio.PDB.AbstractPropertyMap import AbstractPropertyMap
from Bio.PDB.PDBParser import PDBParser
from Bio.PDB.Polypeptide import CaPPBuilder, is_aa
from Bio.PDB.Vector import rotaxis
 
                            continue
                        ro=pp2[j]
                        if not is_aa(ro) or not ro.has_id('CA'):
                            continue
                        cao=ro['CA'].get_vector()
                fs=0
                r1=pp1[i]
                if not is_aa(r1) or not r1.has_id('CA'):
                    continue
                ca1=r1['CA']
                            continue
                        r2=pp2[j]
                        if not is_aa(r2) or not r2.has_id('CA'):
                            continue
                        ca2=r2['CA']

src/b/i/biopython-HEAD/Bio/PDB/HSExposure.py   biopython(Download)
from Bio.PDB.AbstractPropertyMap import AbstractPropertyMap
from Bio.PDB.PDBParser import PDBParser
from Bio.PDB.Polypeptide import CaPPBuilder, is_aa
from Bio.PDB.Vector import rotaxis
 
                            continue
                        ro=pp2[j]
                        if not is_aa(ro) or not ro.has_id('CA'):
                            continue
                        cao=ro['CA'].get_vector()
                fs=0
                r1=pp1[i]
                if not is_aa(r1) or not r1.has_id('CA'):
                    continue
                ca1=r1['CA']
                            continue
                        r2=pp2[j]
                        if not is_aa(r2) or not r2.has_id('CA'):
                            continue
                        ca2=r2['CA']

src/b/i/biopython-1.63/Bio/PDB/StructureAlignment.py   biopython(Download)
 
from Bio.PDB import Selection
from Bio.PDB.Polypeptide import is_aa
 
 
                    r1=rl1[p1]
                    p1=p1+1
                    if is_aa(r1):
                        break
                self._test_equivalence(r1, aa1)
                    r2=rl2[p2]
                    p2=p2+1
                    if is_aa(r2):
                        break
                self._test_equivalence(r2, aa2)

src/b/i/biopython-HEAD/Bio/PDB/StructureAlignment.py   biopython(Download)
 
from Bio.PDB import Selection
from Bio.PDB.Polypeptide import is_aa
 
 
                    r1=rl1[p1]
                    p1=p1+1
                    if is_aa(r1):
                        break
                self._test_equivalence(r1, aa1)
                    r2=rl2[p2]
                    p2=p2+1
                    if is_aa(r2):
                        break
                self._test_equivalence(r2, aa2)

src/b/i/biopython-1.63/Bio/PDB/ResidueDepth.py   biopython(Download)
from Bio.PDB import Selection
from Bio.PDB.AbstractPropertyMap import AbstractPropertyMap
from Bio.PDB.Polypeptide import is_aa
 
 
        # calculate rdepth for each residue
        for residue in residue_list:
            if not is_aa(residue):
                continue
            rd=residue_depth(residue, surface)

src/b/i/biopython-1.63/Bio/PDB/PSEA.py   biopython(Download)
import os
 
from Bio.PDB.Polypeptide import is_aa
 
 
    # Now remove HOH etc.
    for res in all:
        if is_aa(res):
            residues.append(res)
    L=len(residues)

src/b/i/biopython-HEAD/Bio/PDB/ResidueDepth.py   biopython(Download)
from Bio.PDB import Selection
from Bio.PDB.AbstractPropertyMap import AbstractPropertyMap
from Bio.PDB.Polypeptide import is_aa
 
 
        # calculate rdepth for each residue
        for residue in residue_list:
            if not is_aa(residue):
                continue
            rd=residue_depth(residue, surface)

src/b/i/biopython-HEAD/Bio/PDB/PSEA.py   biopython(Download)
import os
 
from Bio.PDB.Polypeptide import is_aa
 
 
    # Now remove HOH etc.
    for res in all:
        if is_aa(res):
            residues.append(res)
    L=len(residues)