Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(16)  |  Call(14)  |  Derive(0)  |  Import(2)

src/b/i/biopython-1.63/Bio/PDB/NeighborSearch.py   biopython(Download)
 
from Bio.PDB.PDBExceptions import PDBException
from Bio.PDB.Selection import unfold_entities, entity_levels, uniqueify
 
 
            return n_atom_list
        else:
            return unfold_entities(n_atom_list, level)
 
    def search_all(self, radius, level="A"):

src/b/i/biopython-HEAD/Bio/PDB/NeighborSearch.py   biopython(Download)
 
from Bio.PDB.PDBExceptions import PDBException
from Bio.PDB.Selection import unfold_entities, entity_levels, uniqueify
 
 
            return n_atom_list
        else:
            return unfold_entities(n_atom_list, level)
 
    def search_all(self, radius, level="A"):

src/b/i/biopython-1.63/Bio/PDB/Superimposer.py   biopython(Download)
    p=PDBParser()
    s1=p.get_structure("FIXED", sys.argv[1])
    fixed=Selection.unfold_entities(s1, "A")
 
    s2=p.get_structure("MOVING", sys.argv[1])
    moving=Selection.unfold_entities(s2, "A")

src/b/i/biopython-1.63/Bio/PDB/StructureAlignment.py   biopython(Download)
        l=fasta_align.get_alignment_length()
        # Get the residues in the models
        rl1=Selection.unfold_entities(m1, 'R')
        rl2=Selection.unfold_entities(m2, 'R')
        # Residue positions

src/b/i/biopython-HEAD/Bio/PDB/Superimposer.py   biopython(Download)
    p=PDBParser()
    s1=p.get_structure("FIXED", sys.argv[1])
    fixed=Selection.unfold_entities(s1, "A")
 
    s2=p.get_structure("MOVING", sys.argv[1])
    moving=Selection.unfold_entities(s2, "A")

src/b/i/biopython-HEAD/Bio/PDB/StructureAlignment.py   biopython(Download)
        l=fasta_align.get_alignment_length()
        # Get the residues in the models
        rl1=Selection.unfold_entities(m1, 'R')
        rl2=Selection.unfold_entities(m2, 'R')
        # Residue positions

src/b/i/biopython-1.63/Bio/PDB/ResidueDepth.py   biopython(Download)
        depth_keys=[]
        # get_residue
        residue_list=Selection.unfold_entities(model, 'R')
        # make surface from PDB file
        surface=get_surface(pdb_file)

src/b/i/biopython-1.63/Bio/PDB/FragmentMapper.py   biopython(Download)
    fm = FragmentMapper(m, 10, 5, "levitt_data")
 
    for r in Selection.unfold_entities(m, "R"):
        print("%s:" % r)
        if r in fm:

src/b/i/biopython-HEAD/Bio/PDB/ResidueDepth.py   biopython(Download)
        depth_keys=[]
        # get_residue
        residue_list=Selection.unfold_entities(model, 'R')
        # make surface from PDB file
        surface=get_surface(pdb_file)

src/b/i/biopython-HEAD/Bio/PDB/FragmentMapper.py   biopython(Download)
    fm = FragmentMapper(m, 10, 5, "levitt_data")
 
    for r in Selection.unfold_entities(m, "R"):
        print("%s:" % r)
        if r in fm: