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src/b/i/biopython-1.63/Tests/test_Fasttree_tool.py biopython(Download)
from Bio import SeqIO from Bio import Phylo from Bio.Phylo.Applications import FastTreeCommandline from Bio.Phylo.Applications import _Fasttree from Bio.Application import ApplicationError
input_file = "does_not_exist.fasta" assert not os.path.isfile(input_file) cline = FastTreeCommandline(fasttree_exe, input=input_file) try: stdout, stderr = cline()
assert os.path.isfile(input_file) assert len(list(SeqIO.parse(input_file, "fasta")))==1 cline = FastTreeCommandline(fasttree_exe, input=input_file) try: stdout, stderr = cline()
input_file = "Medline/pubmed_result1.txt" assert os.path.isfile(input_file) cline = FastTreeCommandline(fasttree_exe, input=input_file) try: stdout, stderr = cline()
src/b/i/biopython-HEAD/Tests/test_Fasttree_tool.py biopython(Download)
from Bio import SeqIO from Bio import Phylo from Bio.Phylo.Applications import FastTreeCommandline from Bio.Phylo.Applications import _Fasttree from Bio.Application import ApplicationError
input_file = "does_not_exist.fasta" assert not os.path.isfile(input_file) cline = FastTreeCommandline(fasttree_exe, input=input_file) try: stdout, stderr = cline()
assert os.path.isfile(input_file) assert len(list(SeqIO.parse(input_file, "fasta")))==1 cline = FastTreeCommandline(fasttree_exe, input=input_file) try: stdout, stderr = cline()
input_file = "Medline/pubmed_result1.txt" assert os.path.isfile(input_file) cline = FastTreeCommandline(fasttree_exe, input=input_file) try: stdout, stderr = cline()