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src/b/i/biopython-1.63/Tests/PAML/gen_results.py   biopython(Download)
                    ctl_file = os.path.join("Control_files", "baseml",
                        "{0}{1}.ctl".format(test[0], n))
                    bml.read_ctl_file(ctl_file)
                    bml.alignment = alignment
                    bml.tree = tree
                ctl_file = os.path.join("Control_files", "baseml",
                    "{0}.ctl".format(test[0]))
                bml.read_ctl_file(ctl_file)
                bml.alignment = alignment
                bml.tree = tree

src/b/i/biopython-HEAD/Tests/PAML/gen_results.py   biopython(Download)
                    ctl_file = os.path.join("Control_files", "baseml",
                        "{0}{1}.ctl".format(test[0], n))
                    bml.read_ctl_file(ctl_file)
                    bml.alignment = alignment
                    bml.tree = tree
                ctl_file = os.path.join("Control_files", "baseml",
                    "{0}.ctl".format(test[0]))
                bml.read_ctl_file(ctl_file)
                bml.alignment = alignment
                bml.tree = tree