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src/b/i/biopython-HEAD/Tests/test_PAML_tools.py   biopython(Download)
    def setUp(self):
        self.cml = codeml.Codeml()
 
    def testCodemlBinary(self):
        """Test that the codeml binary runs and generates correct output

src/b/i/biopython-HEAD/Tests/test_PAML_codeml.py   biopython(Download)
    def setUp(self):
        self.cml = codeml.Codeml()
 
    def testAlignmentFileIsValid(self):
        self.assertRaises((AttributeError, TypeError, OSError),

src/b/i/biopython-HEAD/Tests/PAML/gen_results.py   biopython(Download)
    for test in tests:
        print(test[0])
        cml = codeml.Codeml()
        cml.working_dir = "temp"
        ctl_file = os.path.join("Control_files",

src/b/i/biopython-1.63/Tests/test_PAML_tools.py   biopython(Download)
    def setUp(self):
        self.cml = codeml.Codeml()
 
    def testCodemlBinary(self):
        """Test that the codeml binary runs and generates correct output

src/b/i/biopython-1.63/Tests/test_PAML_codeml.py   biopython(Download)
    def setUp(self):
        self.cml = codeml.Codeml()
 
    def testAlignmentFileIsValid(self):
        self.assertRaises((AttributeError, TypeError, OSError),

src/b/i/biopython-1.63/Tests/PAML/gen_results.py   biopython(Download)
    for test in tests:
        print(test[0])
        cml = codeml.Codeml()
        cml.working_dir = "temp"
        ctl_file = os.path.join("Control_files",