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src/b/i/biopython-1.63/Bio/Phylo/PhyloXMLIO.py   biopython(Download)
    def mol_seq(self, elem):
        is_aligned = elem.get('is_aligned')
        if is_aligned is not None:
            is_aligned = _str2bool(is_aligned)
        return PX.MolSeq(elem.text.strip(), is_aligned=is_aligned)

src/b/i/biopython-HEAD/Bio/Phylo/PhyloXMLIO.py   biopython(Download)
    def mol_seq(self, elem):
        is_aligned = elem.get('is_aligned')
        if is_aligned is not None:
            is_aligned = _str2bool(is_aligned)
        return PX.MolSeq(elem.text.strip(), is_aligned=is_aligned)

src/b/i/biopython-1.63/Tests/test_PhyloXML.py   biopython(Download)
            # location=None,
            mol_seq=PX.MolSeq(
                'TDATGKPIKCMAAIAWEAKKPLSIEEVEVAPPKSGEVRIKILHSGVCHTD'),
            uri=None,
            annotations=[PX.Annotation(ref='EC:1.1.1.1'),

src/b/i/biopython-HEAD/Tests/test_PhyloXML.py   biopython(Download)
            # location=None,
            mol_seq=PX.MolSeq(
                'TDATGKPIKCMAAIAWEAKKPLSIEEVEVAPPKSGEVRIKILHSGVCHTD'),
            uri=None,
            annotations=[PX.Annotation(ref='EC:1.1.1.1'),