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src/b/i/biopython-1.63/Bio/Phylo/PhyloXMLIO.py   biopython(Download)
        control to the top-level parsing function.
        """
        phylogeny = PX.Phylogeny(**_dict_str2bool(parent.attrib,
                                                   ['rooted', 'rerootable']))
        list_types = {

src/b/i/biopython-HEAD/Bio/Phylo/PhyloXMLIO.py   biopython(Download)
        control to the top-level parsing function.
        """
        phylogeny = PX.Phylogeny(**_dict_str2bool(parent.attrib,
                                                   ['rooted', 'rerootable']))
        list_types = {

src/b/i/biopython-1.63/Tests/test_PhyloXML.py   biopython(Download)
        self.assertEqual(clade.taxonomy, None)
        # Phylogeny.confidence
        tree = PX.Phylogeny(True, confidences=[conf])
        self.assertEqual(tree.confidence.type, 'bootstrap')
        tree.confidences.append(conf)

src/b/i/biopython-HEAD/Tests/test_PhyloXML.py   biopython(Download)
        self.assertEqual(clade.taxonomy, None)
        # Phylogeny.confidence
        tree = PX.Phylogeny(True, confidences=[conf])
        self.assertEqual(tree.confidence.type, 'bootstrap')
        tree.confidences.append(conf)

src/b/i/biopython-1.63/Bio/Phylo/BaseTree.py   biopython(Download)
        save this information when you write this tree as 'phyloxml'.
        """
        from Bio.Phylo.PhyloXML import Phylogeny
        return Phylogeny.from_tree(self, **kwargs)
 

src/b/i/biopython-HEAD/Bio/Phylo/BaseTree.py   biopython(Download)
        save this information when you write this tree as 'phyloxml'.
        """
        from Bio.Phylo.PhyloXML import Phylogeny
        return Phylogeny.from_tree(self, **kwargs)