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src/b/i/biopython-1.63/Bio/SearchIO/__init__.py   biopython(Download)
from Bio import BiopythonExperimentalWarning
from Bio.File import as_handle
from Bio.SearchIO._model import QueryResult, Hit, HSP, HSPFragment
from Bio.SearchIO._utils import get_processor
 

src/b/i/biopython-HEAD/Bio/SearchIO/__init__.py   biopython(Download)
from Bio import BiopythonExperimentalWarning
from Bio.File import as_handle
from Bio.SearchIO._model import QueryResult, Hit, HSP, HSPFragment
from Bio.SearchIO._utils import get_processor
 

src/b/i/biopython-1.63/Tests/test_SearchIO_model.py   biopython(Download)
from Bio.Align import MultipleSeqAlignment
from Bio.Alphabet import single_letter_alphabet, generic_dna
from Bio.SearchIO._model import QueryResult, Hit, HSP, HSPFragment
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
hsp121 = HSP([frag121])
# mock Hits
hit11 = Hit([hsp111, hsp112, hsp113, hsp114])
hit21 = Hit([hsp211])
hit31 = Hit([hsp311, hsp312])
hit41 = Hit([hsp411])

src/b/i/biopython-HEAD/Tests/test_SearchIO_model.py   biopython(Download)
with warnings.catch_warnings():
   warnings.simplefilter('ignore', BiopythonExperimentalWarning)
   from Bio.SearchIO._model import QueryResult, Hit, HSP, HSPFragment
 
from Bio.Align import MultipleSeqAlignment
hsp121 = HSP([frag121])
# mock Hits
hit11 = Hit([hsp111, hsp112, hsp113, hsp114])
hit21 = Hit([hsp211])
hit31 = Hit([hsp311, hsp312])
hit41 = Hit([hsp411])

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