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src/b/i/biopython-1.63/Bio/SearchIO/_model/hsp.py   biopython(Download)
 
from Bio._utils import getattr_str, trim_str
from Bio.SearchIO._utils import singleitem, allitems, fullcascade, \
        fragcascade
 
 
    # properties for multi-fragment HSPs
    fragments = allitems(doc="""List of all HSPFragment objects""")
 
    hit_all = allitems('hit',
            doc="""List of all fragments' hit sequences as SeqRecord objects""")
 
    query_all = allitems('query',
            doc="""List of all fragments' query sequences as SeqRecord objects""")
 
    aln_all = allitems('aln',
            doc="""List of all fragments' alignments as MultipleSeqAlignment objects""")
 

src/b/i/biopython-HEAD/Bio/SearchIO/_model/hsp.py   biopython(Download)
 
from Bio._utils import getattr_str, trim_str
from Bio.SearchIO._utils import singleitem, allitems, fullcascade, \
        fragcascade
 
 
    # properties for multi-fragment HSPs
    fragments = allitems(doc="""List of all HSPFragment objects""")
 
    hit_all = allitems('hit',
            doc="""List of all fragments' hit sequences as SeqRecord objects""")
 
    query_all = allitems('query',
            doc="""List of all fragments' query sequences as SeqRecord objects""")
 
    aln_all = allitems('aln',
            doc="""List of all fragments' alignments as MultipleSeqAlignment objects""")
 

src/b/i/biopython-1.63/Bio/SearchIO/_model/hit.py   biopython(Download)
 
from Bio._utils import getattr_str, trim_str
from Bio.SearchIO._utils import allitems, optionalcascade
 
from ._base import _BaseSearchObject
            """ID string of the query that produced the hit""")
    # returns all hsps
    hsps = allitems(doc="""HSP objects contained in the Hit""")
 
    @property

src/b/i/biopython-HEAD/Bio/SearchIO/_model/hit.py   biopython(Download)
 
from Bio._utils import getattr_str, trim_str
from Bio.SearchIO._utils import allitems, optionalcascade
 
from ._base import _BaseSearchObject
            """ID string of the query that produced the hit""")
    # returns all hsps
    hsps = allitems(doc="""HSP objects contained in the Hit""")
 
    @property