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Provides objects to represent biological sequences with alphabets.

See also U{http://biopython.org/wiki/Seq} and the chapter in our tutorial:
 - U{http://biopython.org/DIST/docs/tutorial/Tutorial.html}
 - U{http://biopython.org/DIST/docs/tutorial/Tutorial.pdf}

src/e/d/edge-HEAD/example/gb2gff.py   edge(Download)
 
from Bio import SeqIO
from Bio import Seq
 
from BCBio import GFF

src/b/i/biopython-1.63/Bio/SeqIO/SwissIO.py   biopython(Download)
from __future__ import print_function
 
from Bio import Seq
from Bio import SeqRecord
from Bio import Alphabet

src/b/i/biopython-HEAD/Bio/SeqIO/SwissIO.py   biopython(Download)
from __future__ import print_function
 
from Bio import Seq
from Bio import SeqRecord
from Bio import Alphabet

src/b/i/biopython-1.63/Bio/SeqIO/UniprotIO.py   biopython(Download)
import sys
 
from Bio import Seq
from Bio import SeqFeature
from Bio import Alphabet

src/b/i/biopython-HEAD/Bio/SeqIO/UniprotIO.py   biopython(Download)
import sys
 
from Bio import Seq
from Bio import SeqFeature
from Bio import Alphabet

src/f/a/fastools-0.9.0/fastools/fastools.py   fastools(Download)
import itertools
import Levenshtein
from Bio import Seq, SeqIO, Entrez, pairwise2, Restriction
from Bio.Alphabet import IUPAC
from Bio.SeqRecord import SeqRecord

src/r/n/rnaseqlib-HEAD/rnaseqlib/fastx_utils.py   rnaseqlib(Download)
def bam_to_rec(in_file):
    """
    Generator to convert BAM files into Biopython SeqRecords.
    """
    from Bio import SeqIO, Seq, SeqRecord
    By default converts to FASTA record.
    """
    from Bio import SeqIO, Seq, SeqRecord
    out_file = "%s.fa" %(os.path.splitext(in_file)[0])
    out_handle = write_open_fastx(out_file)

src/s/s/SSuMMo-0.3/lib/simulate_lengths.py   SSuMMo(Download)
import multiprocessing
import CONFIG
from Bio import SeqIO, SeqRecord, Seq, Alphabet
try:
    import SSUMMOv06 as SSUMMO ## needs to be maintained!!

src/b/i/biopython-1.63/Bio/motifs/meme.py   biopython(Download)
 
from Bio.Alphabet import IUPAC
from Bio import Seq
from Bio import motifs
 

src/b/i/biopython-HEAD/Bio/motifs/meme.py   biopython(Download)
 
from Bio.Alphabet import IUPAC
from Bio import Seq
from Bio import motifs
 

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