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Create a Seq object.

Arguments:
 - seq      - Sequence, required (string)
 - alphabet - Optional argument, an Alphabet object from Bio.Alphabet

You will typically use Bio.SeqIO to read in sequences from files as
SeqRecord objects, whose sequence will be exposed as a Seq object via
the seq property.
(more...)

src/b/i/biopython-HEAD/Bio/CodonAlign/CodonSeq.py   biopython(Download)
        #   codon sequence appears in the alignment
 
        Seq.__init__(self, data.upper(), alphabet=alphabet)
        self.gap_char = gap_char
 

src/p/y/pydna-0.6.1/pydna/dsdna.py   pydna(Download)
            raise Exception("DNA is circular, but has staggered ends!\n")
 
        Seq.__init__(self, self.todata, alphabet)
 
    def find(self, sub, start=0, end=sys.maxint):

src/p/y/python-dna-0.1.2/pydna/dsdna.py   python-dna(Download)
            raise Exception("DNA is circular, but has staggered ends!\n")
 
        Seq.__init__(self, self.todata, alphabet)
 
    def __getitem__(self, slc):

src/b/i/biopython-HEAD/Bio/Motif/Parsers/MEME.py   biopython(Download)
    def __init__ (self,*args,**kwds):
        Seq.Seq.__init__(self,*args,**kwds)
        self.sequence_name = ""
        self.start = 0
        self.pvalue = 1.0

src/b/i/biopython-1.63/Bio/Motif/Parsers/MEME.py   biopython(Download)
    def __init__ (self,*args,**kwds):
        Seq.Seq.__init__(self,*args,**kwds)
        self.sequence_name = ""
        self.start = 0
        self.pvalue = 1.0

src/b/i/biopython-HEAD/Bio/motifs/meme.py   biopython(Download)
    def __init__(self,*args,**kwds):
        Seq.Seq.__init__(self,*args,**kwds)
        self.sequence_name = ""
        self.start = 0
        self.pvalue = 1.0

src/b/i/biopython-1.63/Bio/motifs/meme.py   biopython(Download)
    def __init__(self,*args,**kwds):
        Seq.Seq.__init__(self,*args,**kwds)
        self.sequence_name = ""
        self.start = 0
        self.pvalue = 1.0

src/w/l/wLib-1.1.0/external/Motif/Parsers/MEME.py   wLib(Download)
    def __init__ (self,*args,**kwds):
        Seq.Seq.__init__(self,*args,**kwds)
        self.sequence_name = ""
        self.start = 0
        self.pvalue = 1.0