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src/b/i/biopython-1.63/Bio/SeqIO/QualityIO.py   biopython(Download)
    >>> os.remove("Quality/temp.fastq")
    """
    from Bio.SeqIO.FastaIO import FastaIterator
    fasta_iter = FastaIterator(fasta_handle, alphabet=alphabet,
                               title2ids=title2ids)

src/b/i/biopython-HEAD/Bio/SeqIO/QualityIO.py   biopython(Download)
    >>> os.remove("Quality/temp.fastq")
    """
    from Bio.SeqIO.FastaIO import FastaIterator
    fasta_iter = FastaIterator(fasta_handle, alphabet=alphabet,
                               title2ids=title2ids)

src/a/3/A3MIO-0.0.1/A3MIO.py   A3MIO(Download)
 
import Bio.SeqIO
from Bio.SeqIO.FastaIO import SimpleFastaParser, FastaIterator
from Bio.Alphabet import single_letter_alphabet
from Bio.Seq import Seq

src/s/e/seq_crumbs-HEAD/crumbs/utils/optional_modules.py   seq_crumbs(Download)
 
try:
    from Bio.SeqIO.FastaIO import FastaIterator
except ImportError:
    FastaIterator = create_fake_class(MSG + BIO)

src/b/i/biopython-1.63/Tests/test_SeqIO_FastaIO.py   biopython(Download)
 
from Bio import SeqIO
from Bio.SeqIO.FastaIO import FastaIterator
from Bio.Alphabet import generic_protein, generic_nucleotide, generic_dna
 
def read_single_with_titles(filename, alphabet):
    global title_to_ids
    handle = open(filename)
    iterator = FastaIterator(handle, alphabet, title_to_ids)
    record = next(iterator)
    def multi_check(self, filename, alphabet):
        """Basic test for parsing multi-record FASTA files."""
        with open(filename) as handle:
            re_titled = list(FastaIterator(handle, alphabet, title_to_ids))
        default = list(SeqIO.parse(filename, "fasta", alphabet))

src/b/i/biopython-HEAD/Tests/test_SeqIO_FastaIO.py   biopython(Download)
 
from Bio import SeqIO
from Bio.SeqIO.FastaIO import FastaIterator
from Bio.Alphabet import generic_protein, generic_nucleotide, generic_dna
 
def read_single_with_titles(filename, alphabet):
    global title_to_ids
    handle = open(filename)
    iterator = FastaIterator(handle, alphabet, title_to_ids)
    record = next(iterator)
    def multi_check(self, filename, alphabet):
        """Basic test for parsing multi-record FASTA files."""
        with open(filename) as handle:
            re_titled = list(FastaIterator(handle, alphabet, title_to_ids))
        default = list(SeqIO.parse(filename, "fasta", alphabet))