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src/b/i/biopython-1.63/Bio/SeqIO/QualityIO.py   biopython(Download)
from Bio.Seq import Seq, UnknownSeq
from Bio.SeqRecord import SeqRecord
from Bio.SeqIO.Interfaces import SequentialSequenceWriter
from math import log
import warnings
class FastqPhredWriter(SequentialSequenceWriter):
    """Class to write standard FASTQ format files (using PHRED quality scores).
 
    Although you can use this class directly, you are strongly encouraged
    to use the Bio.SeqIO.write() function instead via the format name "fastq"
class QualPhredWriter(SequentialSequenceWriter):
    """Class to write QUAL format files (using PHRED quality scores).
 
    Although you can use this class directly, you are strongly encouraged
    to use the Bio.SeqIO.write() function instead.  For example, this code
class FastqSolexaWriter(SequentialSequenceWriter):
    r"""Write old style Solexa/Illumina FASTQ format files (with Solexa qualities).
 
    This outputs FASTQ files like those from the early Solexa/Illumina
    pipeline, using Solexa scores and an ASCII offset of 64. These are
class FastqIlluminaWriter(SequentialSequenceWriter):
    r"""Write Illumina 1.3+ FASTQ format files (with PHRED quality scores).
 
    This outputs FASTQ files like those from the Solexa/Illumina 1.3+ pipeline,
    using PHRED scores and an ASCII offset of 64. Note these files are NOT

src/b/i/biopython-HEAD/Bio/SeqIO/QualityIO.py   biopython(Download)
from Bio.Seq import Seq, UnknownSeq
from Bio.SeqRecord import SeqRecord
from Bio.SeqIO.Interfaces import SequentialSequenceWriter
from math import log
import warnings
class FastqPhredWriter(SequentialSequenceWriter):
    """Class to write standard FASTQ format files (using PHRED quality scores).
 
    Although you can use this class directly, you are strongly encouraged
    to use the Bio.SeqIO.write() function instead via the format name "fastq"
class QualPhredWriter(SequentialSequenceWriter):
    """Class to write QUAL format files (using PHRED quality scores).
 
    Although you can use this class directly, you are strongly encouraged
    to use the Bio.SeqIO.write() function instead.  For example, this code
class FastqSolexaWriter(SequentialSequenceWriter):
    r"""Write old style Solexa/Illumina FASTQ format files (with Solexa qualities).
 
    This outputs FASTQ files like those from the early Solexa/Illumina
    pipeline, using Solexa scores and an ASCII offset of 64. These are
class FastqIlluminaWriter(SequentialSequenceWriter):
    r"""Write Illumina 1.3+ FASTQ format files (with PHRED quality scores).
 
    This outputs FASTQ files like those from the Solexa/Illumina 1.3+ pipeline,
    using PHRED scores and an ASCII offset of 64. Note these files are NOT

src/b/i/biopython-1.63/Bio/SeqIO/TabIO.py   biopython(Download)
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.SeqIO.Interfaces import SequentialSequenceWriter
 
 
class TabWriter(SequentialSequenceWriter):
    """Class to write simple tab separated format files.
 
    Each line consists of "id(tab)sequence" only.
 

src/b/i/biopython-1.63/Bio/SeqIO/PhdIO.py   biopython(Download)
from Bio.SeqRecord import SeqRecord
from Bio.Sequencing import Phd
from Bio.SeqIO.Interfaces import SequentialSequenceWriter
from Bio.SeqIO import QualityIO
 
class PhdWriter(SequentialSequenceWriter):
    """Class to write Phd format files"""
 
    def __init__(self, handle):
        SequentialSequenceWriter.__init__(self, handle)

src/b/i/biopython-1.63/Bio/SeqIO/FastaIO.py   biopython(Download)
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.SeqIO.Interfaces import SequentialSequenceWriter
 
 
class FastaWriter(SequentialSequenceWriter):
    """Class to write Fasta format files."""
    def __init__(self, handle, wrap=60, record2title=None):
        """Create a Fasta writer.
 

src/b/i/biopython-HEAD/Bio/SeqIO/TabIO.py   biopython(Download)
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.SeqIO.Interfaces import SequentialSequenceWriter
 
 
class TabWriter(SequentialSequenceWriter):
    """Class to write simple tab separated format files.
 
    Each line consists of "id(tab)sequence" only.
 

src/b/i/biopython-HEAD/Bio/SeqIO/PhdIO.py   biopython(Download)
from Bio.SeqRecord import SeqRecord
from Bio.Sequencing import Phd
from Bio.SeqIO.Interfaces import SequentialSequenceWriter
from Bio.SeqIO import QualityIO
 
class PhdWriter(SequentialSequenceWriter):
    """Class to write Phd format files"""
 
    def __init__(self, handle):
        SequentialSequenceWriter.__init__(self, handle)

src/b/i/biopython-HEAD/Bio/SeqIO/FastaIO.py   biopython(Download)
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.SeqIO.Interfaces import SequentialSequenceWriter
 
 
class FastaWriter(SequentialSequenceWriter):
    """Class to write Fasta format files."""
    def __init__(self, handle, wrap=60, record2title=None):
        """Create a Fasta writer.