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Bio.SeqIO support for the FASTQ and QUAL file formats.

Note that you are expected to use this code via the Bio.SeqIO interface, as
shown below.

The FASTQ file format is used frequently at the Wellcome Trust Sanger Institute
to bundle a FASTA sequence and its PHRED quality data (integers between 0 and
90).  Rather than using a single FASTQ file, often paired FASTA and QUAL files
are used containing the sequence and the quality information separately.
(more...)

src/s/e/seqmagick-0.5.0/seqmagick/subcommands/quality_filter.py   seqmagick(Download)
    trie = None
    triefind = None
from Bio.SeqIO import QualityIO
 
from seqmagick import fileformat, __version__

src/b/i/biopython-1.63/Bio/SeqIO/PhdIO.py   biopython(Download)
from Bio.Sequencing import Phd
from Bio.SeqIO.Interfaces import SequentialSequenceWriter
from Bio.SeqIO import QualityIO
 
 

src/s/e/seqmagick-HEAD/seqmagick/subcommands/quality_filter.py   seqmagick(Download)
    trie = None
    triefind = None
from Bio.SeqIO import QualityIO
 
from seqmagick import fileformat, __version__

src/b/i/biopython-HEAD/Bio/SeqIO/PhdIO.py   biopython(Download)
from Bio.Sequencing import Phd
from Bio.SeqIO.Interfaces import SequentialSequenceWriter
from Bio.SeqIO import QualityIO
 
 

src/b/i/biopython-HEAD/Tests/test_SeqIO_QualityIO.py   biopython(Download)
from Bio import BiopythonWarning, BiopythonParserWarning
from Bio.Alphabet import generic_dna
from Bio.SeqIO import QualityIO
from Bio import SeqIO
from Bio.Seq import Seq, UnknownSeq, MutableSeq

src/b/i/biopython-HEAD/Tests/test_SeqIO_convert.py   biopython(Download)
from Bio.Seq import UnknownSeq
from Bio import SeqIO
from Bio.SeqIO import QualityIO
from Bio.SeqIO._convert import _converter as converter_dict
from Bio._py3k import StringIO

src/b/i/biopython-1.63/Tests/test_SeqIO_QualityIO.py   biopython(Download)
from Bio import BiopythonWarning
from Bio.Alphabet import generic_dna
from Bio.SeqIO import QualityIO
from Bio import SeqIO
from Bio.Seq import Seq, UnknownSeq, MutableSeq

src/b/i/biopython-1.63/Tests/test_SeqIO_convert.py   biopython(Download)
from Bio.Seq import UnknownSeq
from Bio import SeqIO
from Bio.SeqIO import QualityIO
from Bio.SeqIO._convert import _converter as converter_dict
from Bio._py3k import StringIO