Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(14)  |  Call(0)  |  Derive(0)  |  Import(14)
Represent a Sequence Record, a sequence with annotation.

src/b/i/biopython-1.63/Bio/SeqIO/SwissIO.py   biopython(Download)
 
from Bio import Seq
from Bio import SeqRecord
from Bio import Alphabet
from Bio import SeqFeature

src/b/i/biopython-HEAD/Bio/SeqIO/SwissIO.py   biopython(Download)
 
from Bio import Seq
from Bio import SeqRecord
from Bio import Alphabet
from Bio import SeqFeature

src/r/n/rnaseqlib-HEAD/rnaseqlib/fastx_utils.py   rnaseqlib(Download)
def bam_to_rec(in_file):
    """
    Generator to convert BAM files into Biopython SeqRecords.
    """
    from Bio import SeqIO, Seq, SeqRecord
    By default converts to FASTA record.
    """
    from Bio import SeqIO, Seq, SeqRecord
    out_file = "%s.fa" %(os.path.splitext(in_file)[0])
    out_handle = write_open_fastx(out_file)

src/c/g/cgat-HEAD/obsolete/get_sequences_from_www.py   cgat(Download)
import CGAT.Experiment as E
 
from Bio import SeqRecord
import Bio.ExPASy as ExPASy
import Bio.SwissProt as SProt

src/s/s/SSuMMo-0.3/lib/simulate_lengths.py   SSuMMo(Download)
import multiprocessing
import CONFIG
from Bio import SeqIO, SeqRecord, Seq, Alphabet
try:
    import SSUMMOv06 as SSUMMO ## needs to be maintained!!

src/r/n/rnaseqlib-HEAD/rnaseqlib/bam/bam_utils.py   rnaseqlib(Download)
    Generator to convert BAM files into Biopython SeqRecords.
    """
    from Bio import SeqIO, Seq, SeqRecord
    bam_file = pysam.Samfile(in_file, "rb")
    rec_num = 1
    """
    logger.info("Converting %s to FASTA" %(in_file))
    from Bio import SeqIO, Seq, SeqRecord
    out_handle = fastx_utils.write_open_fastx(out_file)
    logger.info("  - Output file: %s" %(out_file))

src/p/y/PyBioMaps-0.1.0/pybiomaps/plugins/seq.py   PyBioMaps(Download)
 
from pybiomaps.resource import BaseView, ResourceQueryError
from Bio import SeqIO, Seq, SeqRecord
 
 

src/p/y/PyBioMaps-0.1.0/pybiomaps/plugins/ruler.py   PyBioMaps(Download)
from pybiomaps.resource import BaseView, ResourceQueryError
from pybiomaps.render.color import pick as color_picker
from Bio import SeqIO, Seq, SeqRecord
 
import logging

src/p/y/PyBioMaps-0.1.0/pybiomaps/plugins/phb.py   PyBioMaps(Download)
from pybiomaps.lib import pyseq
from pybiomaps.lib.pyseq import renderer
from pybiomaps.lib.pyseq import shapes
 
from Bio import SeqIO, Seq, SeqRecord

src/p/y/PyBioMaps-0.1.0/pybiomaps/plugins/newick.py   PyBioMaps(Download)
 
from pybiomaps.resource import BaseView, ResourceQueryError
from Bio import SeqIO, Seq, SeqRecord
 
def next(s, search):

  1 | 2  Next