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src/b/i/biopython-1.63/Tests/test_BWA_tool.py   biopython(Download)
    def do_aln(self, in_file, out_file):
        """Test for generating sai files given the reference and read file"""
        cmdline = BwaAlignCommandline()
        cmdline.set_parameter("reference", self.reference_file)
        cmdline.read_file = in_file

src/b/i/biopython-HEAD/Tests/test_BWA_tool.py   biopython(Download)
    def do_aln(self, in_file, out_file):
        """Test for generating sai files given the reference and read file"""
        cmdline = BwaAlignCommandline(bwa_exe)
        cmdline.set_parameter("reference", self.reference_file)
        cmdline.read_file = in_file