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src/b/i/biopython-1.63/Tests/test_BWA_tool.py   biopython(Download)
 
        cmdline = BwaSampeCommandline()
        cmdline.set_parameter("reference", self.reference_file)
        cmdline.set_parameter("sai_file1", self.saifile1)
        cmdline.set_parameter("sai_file2", self.saifile2)
        cmdline.set_parameter("read_file1", self.infile1)
        cmdline.set_parameter("read_file2", self.infile2)

src/b/i/biopython-HEAD/Tests/test_BWA_tool.py   biopython(Download)
 
            cmdline = BwaSampeCommandline(bwa_exe)
            cmdline.set_parameter("reference", self.reference_file)
            cmdline.set_parameter("sai_file1", self.saifile1)
            cmdline.set_parameter("sai_file2", self.saifile2)
            cmdline.set_parameter("read_file1", self.infile1)
            cmdline.set_parameter("read_file2", self.infile2)