Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(6)  |  Call(6)  |  Derive(0)  |  Import(0)

src/b/i/biopython-1.63/Tests/test_BWA_tool.py   biopython(Download)
    def test_samse(self):
        """Test for single end sequencing """
        cmdline = BwaSamseCommandline()
        cmdline.set_parameter("reference", self.reference_file)
        cmdline.set_parameter("read_file", self.infile1)
        cmdline.set_parameter("sai_file", self.saifile1)

src/b/i/biopython-HEAD/Tests/test_BWA_tool.py   biopython(Download)
            self.do_aln(self.infile1, self.saifile1)
            cmdline = BwaSamseCommandline(bwa_exe)
            cmdline.set_parameter("reference", self.reference_file)
            cmdline.set_parameter("read_file", self.infile1)
            cmdline.set_parameter("sai_file", self.saifile1)