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src/b/i/biopython-HEAD/Tests/test_samtools_tool.py   biopython(Download)
    def test_calmd(self):
        """Test for samtools calmd"""
        self.create_fasta_index()
        cmdline = SamtoolsCalmdCommandline(samtools_exe)
        cmdline.set_parameter("reference", self.reference)
        cmdline.set_parameter("input_bam", self.bamfile1)