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src/b/i/biopython-HEAD/Tests/test_samtools_tool.py   biopython(Download)
from Bio.Sequencing.Applications import SamtoolsViewCommandline
from Bio.Sequencing.Applications import SamtoolsCalmdCommandline
from Bio.Sequencing.Applications import SamtoolsCatCommandline
from Bio.Sequencing.Applications import SamtoolsFaidxCommandline
from Bio.Sequencing.Applications import SamtoolsIdxstatsCommandline
    def test_cat(self):
        cmdline = SamtoolsCatCommandline(samtools_exe)
        cmdline.set_parameter("o", self.outbamfile)
        cmdline.set_parameter("input_bam", [self.bamfile1, self.bamfile2])
        stdout, stderr = cmdline()