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src/b/i/biopython-HEAD/Tests/test_samtools_tool.py   biopython(Download)
from Bio.Sequencing.Applications import SamtoolsCatCommandline
from Bio.Sequencing.Applications import SamtoolsFaidxCommandline
from Bio.Sequencing.Applications import SamtoolsIdxstatsCommandline
from Bio.Sequencing.Applications import SamtoolsIndexCommandline
from Bio.Sequencing.Applications import SamtoolsMergeCommandline
    def test_idxstats(self):
        self.create_bam_index(self.bamfile1)
        cmdline = SamtoolsIdxstatsCommandline(samtools_exe)
        cmdline.set_parameter("input_bam", self.bamfile1)
        stdout, stderr = cmdline()