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src/m/e/metascript-0.1.1/lib/pairup.py   metascript(Download)
 
    print >>sys.stderr, "DEBUG cmdline: ", 
    columns = psw.align(gene_pair_local, INTRON_SCORES, PENALTY_GAP_START, PENALTY_GAP_EXTENSION, debug=True)
 
    seqs = [seq for defline, seq in itertools.chain(*itertools.imap(light_iterator, gene_pair_local))]