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src/b/i/biopython-1.63/Bio/SearchIO/_model/hit.py   biopython(Download)
from Bio._py3k import filter
 
from Bio._utils import getattr_str, trim_str
from Bio.SearchIO._utils import allitems, optionalcascade
 
            for idx, hsp in enumerate(self.hsps):
                # evalue
                evalue = getattr_str(hsp, 'evalue', fmt='%.2g')
                # bitscore
                bitscore = getattr_str(hsp, 'bitscore', fmt='%.2f')
                # alignment length
                aln_span = getattr_str(hsp, 'aln_span')
                # query region
                query_start = getattr_str(hsp, 'query_start')

src/b/i/biopython-HEAD/Bio/SearchIO/_model/hit.py   biopython(Download)
from Bio._py3k import filter
 
from Bio._utils import getattr_str, trim_str
from Bio.SearchIO._utils import allitems, optionalcascade
 
            for idx, hsp in enumerate(self.hsps):
                # evalue
                evalue = getattr_str(hsp, 'evalue', fmt='%.2g')
                # bitscore
                bitscore = getattr_str(hsp, 'bitscore', fmt='%.2f')
                # alignment length
                aln_span = getattr_str(hsp, 'aln_span')
                # query region
                query_start = getattr_str(hsp, 'query_start')

src/b/i/biopython-1.63/Bio/SearchIO/_model/hsp.py   biopython(Download)
from Bio.SeqRecord import SeqRecord
 
from Bio._utils import getattr_str, trim_str
from Bio.SearchIO._utils import singleitem, allitems, fullcascade, \
        fragcascade
        statline = []
        # evalue
        evalue = getattr_str(self, 'evalue', fmt='%.2g')
        statline.append('evalue ' + evalue)
        # bitscore
        bitscore = getattr_str(self, 'bitscore', fmt='%.2f')
                # set hsp line and table
                # alignment span
                aln_span = getattr_str(block, 'aln_span')
                # query region
                query_start = getattr_str(block, 'query_start')

src/b/i/biopython-HEAD/Bio/SearchIO/_model/hsp.py   biopython(Download)
from Bio.SeqRecord import SeqRecord
 
from Bio._utils import getattr_str, trim_str
from Bio.SearchIO._utils import singleitem, allitems, fullcascade, \
        fragcascade
        statline = []
        # evalue
        evalue = getattr_str(self, 'evalue', fmt='%.2g')
        statline.append('evalue ' + evalue)
        # bitscore
        bitscore = getattr_str(self, 'bitscore', fmt='%.2f')
                # set hsp line and table
                # alignment span
                aln_span = getattr_str(block, 'aln_span')
                # query region
                query_start = getattr_str(block, 'query_start')

src/b/i/biopython-1.63/Bio/SearchIO/_model/_base.py   biopython(Download)
 
 
from Bio._utils import getattr_str, trim_str
 
 
 
        # coordinates
        query_start = getattr_str(self, 'query_start')
        query_end = getattr_str(self, 'query_end')
        hit_start = getattr_str(self, 'hit_start')
        hit_end = getattr_str(self, 'hit_end')

src/b/i/biopython-HEAD/Bio/SearchIO/_model/_base.py   biopython(Download)
 
 
from Bio._utils import getattr_str, trim_str
 
 
 
        # coordinates
        query_start = getattr_str(self, 'query_start')
        query_end = getattr_str(self, 'query_end')
        hit_start = getattr_str(self, 'hit_start')
        hit_end = getattr_str(self, 'hit_end')