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src/b/i/biopython-1.63/Bio/motifs/alignace.py   biopython(Download)
"""
 
from Bio.motifs import Motif, Instances
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq
        elif line[:3]=="MAP":
            alphabet = IUPAC.unambiguous_dna
            instances = Instances(instances, alphabet)
            motif = Motif(alphabet, instances)
            motif.score = float(line.split()[-1])

src/b/i/biopython-HEAD/Bio/motifs/alignace.py   biopython(Download)
"""
 
from Bio.motifs import Motif, Instances
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq
        elif line[:3]=="MAP":
            alphabet = IUPAC.unambiguous_dna
            instances = Instances(instances, alphabet)
            motif = Motif(alphabet, instances)
            motif.score = float(line.split()[-1])

src/b/i/biopython-1.63/Bio/motifs/jaspar/__init__.py   biopython(Download)
        instances.append(instance)
 
    instances = motifs.Instances(instances, alphabet)
    motif = Motif(
        matrix_id=None, name=None, alphabet=alphabet, instances=instances

src/b/i/biopython-HEAD/Bio/motifs/jaspar/__init__.py   biopython(Download)
        instances.append(instance)
 
    instances = motifs.Instances(instances, alphabet)
    motif = Motif(
        matrix_id=None, name=None, alphabet=alphabet, instances=instances

src/b/i/biopython-1.63/Bio/motifs/meme.py   biopython(Download)
    else:
        raise ValueError('Unexpected end of stream')
    return motifs.Instances(instances, alphabet)
 
 

src/b/i/biopython-HEAD/Bio/motifs/meme.py   biopython(Download)
    else:
        raise ValueError('Unexpected end of stream')
    return motifs.Instances(instances, alphabet)