Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(10)  |  Call(2)  |  Derive(6)  |  Import(2)

src/b/i/biopython-1.63/Bio/motifs/alignace.py   biopython(Download)
"""
 
from Bio.motifs import Motif, Instances
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq
            alphabet = IUPAC.unambiguous_dna
            instances = Instances(instances, alphabet)
            motif = Motif(alphabet, instances)
            motif.score = float(line.split()[-1])
            motif.number = number

src/b/i/biopython-HEAD/Bio/motifs/alignace.py   biopython(Download)
"""
 
from Bio.motifs import Motif, Instances
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq
            alphabet = IUPAC.unambiguous_dna
            instances = Instances(instances, alphabet)
            motif = Motif(alphabet, instances)
            motif.score = float(line.split()[-1])
            motif.number = number

src/b/i/biopython-1.63/Bio/motifs/jaspar/__init__.py   biopython(Download)
class Motif(motifs.Motif):
    """
    A subclass of Bio.motifs.Motif used to represent a JASPAR profile with
    additional metadata information if available. The metadata availability
    depends on the source of the JASPAR motif (a 'pfm' format file, a 'jaspar'

src/b/i/biopython-HEAD/Bio/motifs/jaspar/__init__.py   biopython(Download)
class Motif(motifs.Motif):
 
    """
    A subclass of Bio.motifs.Motif used to represent a JASPAR profile.
 

src/b/i/biopython-1.63/Bio/motifs/meme.py   biopython(Download)
class Motif(motifs.Motif):
    """A subclass of Motif used in parsing MEME (and MAST) output.
 
    This subclass defines functions and data specific to MEME motifs.
    This includes the motif name, the evalue for a motif, and its number

src/b/i/biopython-HEAD/Bio/motifs/meme.py   biopython(Download)
class Motif(motifs.Motif):
    """A subclass of Motif used in parsing MEME (and MAST) output.
 
    This subclass defines functions and data specific to MEME motifs.
    This includes the motif name, the evalue for a motif, and its number

src/b/i/biopython-1.63/Bio/motifs/transfac.py   biopython(Download)
class Motif(motifs.Motif, dict):
    """A Bio.motifs.transfac.Motif stores the information in one TRANSFAC
motif. This class inherits from the Bio.motifs.Motif base class, as well
as from a Python dictionary. All motif information found by the parser
is stored as attributes of the base class when possible; see the

src/b/i/biopython-HEAD/Bio/motifs/transfac.py   biopython(Download)
class Motif(motifs.Motif, dict):
    """A Bio.motifs.transfac.Motif stores the information in one TRANSFAC
motif. This class inherits from the Bio.motifs.Motif base class, as well
as from a Python dictionary. All motif information found by the parser
is stored as attributes of the base class when possible; see the