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All Samples(11)  |  Call(6)  |  Derive(0)  |  Import(5)

src/b/i/biskit-2.4/Biskit/Dock/ComplexRandomizer.py   biskit(Download)
"""
 
from Biskit.Dock.Complex import Complex
import Biskit.mathUtils as ma
import Biskit.molUtils as mol
        @rtype: Complex
        """
        return Complex( self.rec, self.lig,
                        ligMatrix= self.__random_matrix() )
 
        self.cm.run( inp_mirror=inp_mirror )
 
        com = Complex( self.rec, self.lig )
 
        rt = com.extractLigandMatrix( self.cm.lig )

src/b/i/biskit-2.4/Biskit/AmberEntropist.py   biskit(Download)
from Biskit.EnsembleTraj import EnsembleTraj
from Biskit.LocalPath import LocalPath
from Biskit.Dock.Complex import Complex
from Biskit import EHandler
 
                     PDBModel( self.__getModel(f2) )
 
            ref = Complex( m1, m2 )
        else:
            ref = t.load( fname )
            rec = ref.takeChains( range(t[0].lenChains()) )
            lig = ref.takeChains( range(t[0].lenChains(), t[1].lenChains()) )
            ref = Complex( rec, lig )
 
        if ref and type(t) is not tuple and isinstance( ref, Complex ):

src/b/i/biskit-2.4/scripts/analysis/a_rmsd_vs_dock_performance.py   biskit(Download)
from Biskit.tools import *
from string import *
from Biskit.Dock.Complex import Complex as ProteinComplex
from Biskit.mathUtils import *
 
 
## contacts
ref_com_b_cast = ProteinComplex( rec_b_ref, lig_b_ref )
ref_b_resCont = ref_com_b_cast.resContacts()
 

src/b/i/biskit-2.4/scripts/analysis/a_cad.py   biskit(Download)
from string import *
import biggles
from Biskit.Dock.Complex import Complex as ProteinComplex
from Biskit.mathUtils import *
import pipes
 
## contacts
ref_com_b_cast = ProteinComplex( rec_b_ref, lig_b_ref )
ref_b_resCont = ref_com_b_cast.resContacts()
 

src/b/i/biskit-2.4/Biskit/Dock/ComplexList.py   biskit(Download)
from Biskit.Errors import BiskitError
 
from Biskit.Dock.Complex import Complex
from Biskit.Dock.ComplexModelRegistry import ComplexModelRegistry