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src/b/i/biskit-2.4/scripts/analysis/random_grouping.py   biskit(Download)
 
from Biskit.tools import *
from Biskit.Dock import ComplexRandomizer, ComplexList
from Biskit.Dock import ContactMaster, ComplexGroups
 

src/b/i/biskit-2.4/scripts/Dock/contacter.py   biskit(Download)
from Biskit.PVM.hosts import cpus_all, nice_dic
 
from Biskit.Dock import ContactMaster, ComplexList, ComplexEvolvingList
 
import tempfile, os
 
        print '\nCollecting final results...'
        complex_lst = ComplexList()
        for f in subFile_names:
            sub = t.load( f )

src/b/i/biskit-2.4/scripts/analysis/random_complexes.py   biskit(Download)
 
from Biskit.tools import *
from Biskit.Dock import ComplexRandomizer, ComplexList
from Biskit import Trajectory
 
 
cr = ComplexRandomizer( rec, lig, ro, lo, debug=debug )
result = ComplexList()
 
flushPrint('generating...')

src/b/i/biskit-2.4/Biskit/Dock/HexParser.py   biskit(Download)
import re
import numpy.oldnumeric as Numeric  ## array
from Biskit.Dock import Complex, ComplexList
 
from Biskit import PCRModel
        @rtype: ComplexList
        """
        complexes = ComplexList()
        c = self.nextComplex()
 

src/b/i/biskit-2.4/scripts/Biskit/replacePath.py   biskit(Download)
#!/usr/bin/env python
import sys
from Biskit import LocalPath, PDBModel, Trajectory
from Biskit.Dock import Complex, ComplexList
from Biskit.tools import load, dump, absfile

src/b/i/biskit-2.4/Biskit/Dock/ComplexModelRegistry.py   biskit(Download)
    def test_ComplexModelRegistry(self):
        """Dock.ComplexModelRegistry test"""
        from Biskit.Dock import ComplexList
 
        self.cl = T.load( T.testRoot() +'/dock/hex/complexes.cl' )

src/b/i/biskit-2.4/scripts/Dock/reduceComplexList.py   biskit(Download)
from Numeric import *
from Biskit.tools import *
from Biskit.Dock import ComplexList
 
def _use():
    containing the values of the info dic with given key.
    """
    c_new = ComplexList()
 
    flushPrint('Removing HEX solutions greater than 512.\n')

src/b/i/biskit-2.4/scripts/Dock/concat_complexLists.py   biskit(Download)
 
import Biskit.tools as T
from Biskit.Dock import ComplexList
 
import sys
    fs = [ T.absfile( f ) for f in T.toList( options['i'] ) ]
 
    result = ComplexList()
 
    rec_dic = T.load( T.absfile( options['rdic'] ) )

src/b/i/biskit-2.4/Biskit/Dock/Analyzer.py   biskit(Download)
    def test_Analyzer( self):
        """Dock.Analyzer test """
        from Biskit import Trajectory
        from Biskit.Dock import ComplexList