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src/b/i/biskit-2.4/scripts/Biskit/trajpool2ensemble.py   biskit(Download)
from Biskit import Trajectory
from Biskit import EnsembleTraj
from Biskit.EnsembleTraj import traj2ensemble
 
def use():
    sys.exit(0)
 
t = traj2ensemble( t, n )
if 'pdb' in o:
    t.ref.pdbCode = o['pdb']

src/b/i/biskit-2.4/scripts/Biskit/traj2ensemble.py   biskit(Download)
from Biskit import Trajectory
from Biskit import EnsembleTraj
from Biskit.EnsembleTraj import traj2ensemble
 
import numpy.oldnumeric as N
 
T.flushPrint("Converting to EnsembleTraj...")
result = traj2ensemble( result, len(inLst))
 
T.flushPrint( "Done\nDumping ensemble traj to " + o['o'] )

src/b/i/biskit-2.4/scripts/analysis/a_ensemble.py   biskit(Download)
 
from Biskit.tools import *
from Biskit.EnsembleTraj import EnsembleTraj, traj2ensemble
 
def syntax():
 
if not isinstance( t, EnsembleTraj ):
    t = traj2ensemble( t )
 
if o['step'] != 1:

src/b/i/biskit-2.4/Biskit/TrajCluster.py   biskit(Download)
    def test_TrajCluster(self):
        """TrajCluster test"""
        from Biskit.EnsembleTraj import traj2ensemble
 
        traj = T.load( T.testRoot()+'/lig_pcr_00/traj.dat')
 
        traj = traj2ensemble( traj )

src/b/i/biskit-2.4/Biskit/TrajFlexMaster.py   biskit(Download)
from Biskit.Errors import BiskitError
from Biskit.LogFile import ErrLog, LogFile
from Biskit.EnsembleTraj import EnsembleTraj, traj2ensemble
 
import tempfile
 
        traj_1 = T.load( T.testRoot() + '/lig_pcr_00/traj.dat' )
        traj_1 = traj2ensemble( traj_1 )
 
        ## create fake second trajectory by adding

src/b/i/biskit-2.4/Biskit/QualSlave.py   biskit(Download)
import tools as T
from Biskit import Trajectory, EHandler
from Biskit.EnsembleTraj import traj2ensemble, EnsembleTraj
 
from PVM import JobSlave
        """
        t = T.load( T.absfile( ftraj ) )
        return traj2ensemble( t )
 
 

src/b/i/biskit-2.4/scripts/Dock/selectModels.py   biskit(Download)
from Biskit import TrajCluster, EnsembleTraj, PCRModel, molUtils
from Biskit.Dock import hexTools
from Biskit.EnsembleTraj import traj2ensemble
import numpy.oldnumeric as N
 
 
    if traj.__class__ != EnsembleTraj:
        traj = traj2ensemble( traj )
 
    end = traj.lenFrames()

src/b/i/biskit-2.4/scripts/Biskit/thinTraj.py   biskit(Download)
 
from Biskit.tools import *
from Biskit.EnsembleTraj import traj2ensemble
 
import os.path
print "Loading trajectory .. "
traj = load( absfile(o['i']) )
traj = traj2ensemble( traj )
 
print "Removing frames ..."