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src/b/i/biskit-2.4/Biskit/Dock/ContactMaster.py   biskit(Download)
from Biskit.PDBDope import PDBDope
from Biskit.PDBModel import PDBProfiles
from Biskit.Errors import BiskitError
from Biskit.LogFile import StdLog
from Biskit import EHandler
        else:
            if com_version != -1: raise BiskitError(
                'Input list must be ComplexEvolvingList to extract version.')
 
        ## make sure models have a surfaceMask
                del cev[self.com_version]['$temp$']
                if not check_1 == check_2:
                    raise BiskitError('Complex version mixup: %i != %i' \
                                      % (check_1, check_2) )
 

src/b/i/biskit-2.4/Biskit/Executor.py   biskit(Download)
import Biskit.settings as s
from Biskit.LogFile import StdLog
from Biskit.Errors import BiskitError
from Biskit.ExeConfigCache import ExeConfigCache
import Biskit as B
 
class RunError( BiskitError ):
    pass
 
class TemplateError( BiskitError ):

src/b/i/biskit-2.4/Biskit/Mod/SequenceSearcher.py   biskit(Download)
class BlastError( E.BiskitError ):
    pass
 
class InternalError( E.BiskitError ):
    pass

src/b/i/biskit-2.4/Biskit/Dock/ComplexModelRegistry.py   biskit(Download)
 
from Biskit.Dock import Complex
from Biskit.Errors import BiskitError
from Biskit import LocalPath, PDBModel
 
import Biskit.tools as T
 
class RegistryError( BiskitError ):

src/b/i/biskit-2.4/Biskit/Dock/ComplexList.py   biskit(Download)
import Biskit.tools as t
from Biskit import PDBError, EHandler
from Biskit.Errors import BiskitError
 
from Biskit.Dock.Complex import Complex
class ComplexListError( BiskitError ):
    pass
 
class ConditionError( ComplexListError ):
    pass

src/b/i/biskit-2.4/Biskit/Xplorer.py   biskit(Download)
import settings
import Biskit.tools as T
from Biskit.Errors import BiskitError
from Biskit.Executor import Executor, RunError
 
class XplorerError( BiskitError ):

src/b/i/biskit-2.4/Biskit/TrajFlexMaster.py   biskit(Download)
import Biskit.settings as settings
import Biskit.mathUtils as mathUtils
from Biskit.Errors import BiskitError
from Biskit.LogFile import ErrLog, LogFile
from Biskit.EnsembleTraj import EnsembleTraj, traj2ensemble
class FlexError( BiskitError ):
    pass
 
 
class TrajFlexMaster(TrackingJobMaster):

src/b/i/biskit-2.4/Biskit/Trajectory.py   biskit(Download)
import tools as T
import mathUtils as MU
from Biskit.Errors import BiskitError
from Biskit import EHandler
from PDBModel import PDBModel, PDBError
class TrajError( BiskitError ):
    pass
 
 
class TrajProfiles( ProfileCollection ):

src/b/i/biskit-2.4/Biskit/Prosa2003.py   biskit(Download)
from Biskit import  TemplateError
## import Biskit.settings as S
from Biskit.Errors import BiskitError
import time
import subprocess
 
class Prosa2003_Error( BiskitError ):

src/b/i/biskit-2.4/Biskit/LocalPath.py   biskit(Download)
import Biskit.settings as S
from Biskit import EHandler
from Biskit.Errors import BiskitError
 
import os.path
import string
import re
 
class LocalPathError( BiskitError ):

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