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src/b/i/biskit-2.4/Biskit/SurfaceRacer.py   biskit(Download)
        """
 
        Executor.__init__( self, 'surfaceracer', template=self.inp,\
                           **kw )
 

src/b/i/biskit-2.4/Biskit/Dock/Intervor.py   biskit(Download)
        @param **kw: any other keyword=value pair recognized by Executor
        """
        Executor.__init__( self, 'intervor', catch_err=catch_err, **kw )
 
        assert isinstance( model, B.PDBModel ), \

src/b/i/biskit-2.4/Biskit/tmalign.py   biskit(Download)
        self.f_pdbref= tempfile.mktemp( '_tmalign_ref.pdb' )
 
        Executor.__init__( self, 'tmalign', 
                           args= '%s %s' % (self.f_pdbin, self.f_pdbref),
                           **kw )

src/b/i/biskit-2.4/Biskit/IcmCad.py   biskit(Download)
          log      - Biskit.LogFile, program log (None->STOUT) (default: None)
        """
        Executor.__init__( self, 'icmbrowser', template=self.inp_head, **kw )
 
        self.f_ref = tempfile.mktemp('_icmcad_ref.pdb')

src/b/i/biskit-2.4/Biskit/Fold_X.py   biskit(Download)
        self.temp_errlog  = tempfile.mktemp('_foldx_.err')
 
        Executor.__init__( self, 'fold_X', args='-manual %s %s %s'\
                           %(self.temp_pdb, self.temp_option,
                             self.temp_command), **kw )

src/b/i/biskit-2.4/Biskit/AmberLeap.py   biskit(Download)
        kw['catchout'] = kw.get('catchout',0)
 
        Executor.__init__( self, 'tleap', template=template, **kw )
 
        self.args = '-f %s' % self.f_in

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