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src/b/i/biskit-2.4/Biskit/SurfaceRacer.py   biskit(Download)
        if self.i_failed < 2:
            self.probe = self.probe + 0.001
            self.run()
 
        Executor.fail( self )

src/b/i/biskit-2.4/Biskit/Hmmer.py   biskit(Download)
                    'HMMINDEX: Indexing hmm database. This will take a while')
 
            self.run()
 
 

src/b/i/biskit-2.4/Biskit/Pymoler.py   biskit(Download)
    def show( self ):
        """
        Backward compatability with old scripts.
        """
        self.run()

src/b/i/biskit-2.4/Biskit/AmberParmBuilder.py   biskit(Download)
                     log=self.log, verbose=1, catch_err=1)
 
        output,error,status = x.run()
 
        if not os.path.exists( f_out ):