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src/b/i/biskit-2.4/scripts/Mod/modelling_example.py   biskit(Download)
import Biskit.tools as tools
from Biskit import EHandler
from Biskit import LogFile
 
import Biskit.Trajectory as Trajectory
log = None
if 'log' in options:
    log = LogFile( outFolder + '/modelling.log'  )
 
 

src/b/i/biskit-2.4/Biskit/Mod/ModelSlave.py   biskit(Download)
from Biskit.Mod import Modeller as M
 
from Biskit import LogFile
import os
 
        self.params = params
 
        self.errorLog = LogFile( self.ferror, mode='a' )
 
 
            for id, val in dict.items():
 
                modeller_log = LogFile( '%s/Modeller.log' %val["outFolder"] )
 
                d[id] = val

src/b/i/biskit-2.4/Biskit/AmberEntropySlave.py   biskit(Download)
import Biskit.settings as settings
 
from Biskit import LogFile
from Biskit.AmberEntropist import AmberEntropist
from Biskit.AmberCrdEntropist import EntropistError
        """
        self.__dict__.update( params )
        self.errorLog = LogFile( self.ferror, mode='a' )
 
 

src/b/i/biskit-2.4/Biskit/Mod/AlignerSlave.py   biskit(Download)
from Biskit.Mod.ValidationSetup import ValidationSetup as VS
 
from Biskit import LogFile
import os
 
        os.environ["PATH"]=self.params['os.environ']["PATH"]
 
        self.errorLog = LogFile( self.ferror, mode='a' )
 
 
            for id, val in dict.items():
 
                aligner_log = LogFile( '%s/Aligner.log' %val["outFolder"] )
 
                d[id] = val

src/b/i/biskit-2.4/scripts/Mod/search_templates.py   biskit(Download)
import Biskit.tools as tools
from Biskit import EHandler
from Biskit import LogFile
import Biskit.Mod.settings as settings
 
log = None
if options['log']:
    log = LogFile( outFolder + '/' + options['log'], 'a' ) 
 
ext_options = blastOptions( options )

src/b/i/biskit-2.4/scripts/Mod/search_sequences.py   biskit(Download)
import Biskit.tools as tools
from Biskit import EHandler
from Biskit import LogFile
import Biskit.Mod.settings as settings
 
log = None
if options['log']:
    log = LogFile( outFolder + '/' + options['log'], 'a' ) 
 
ext_options = blastOptions( options )

src/b/i/biskit-2.4/scripts/Mod/model.py   biskit(Download)
import Biskit.tools as tools
from Biskit import EHandler
from Biskit import LogFile
 
from Biskit.Pymoler import Pymoler
    o['log'] = o.get('log', None)
    if o['log']:
        o['log'] = LogFile( o['o'] + '/' + options['log'], 'a' )
 
    o['debug'] = int( o.get('debug', 0) )

src/b/i/biskit-2.4/scripts/Mod/clean_templates.py   biskit(Download)
import Biskit.tools as tools
from Biskit import EHandler
from Biskit import LogFile
 
import sys, os.path
log = None
if options['log']:
    log = LogFile( outFolder + '/' + options['log'], 'a' ) 
 
###################

src/b/i/biskit-2.4/scripts/Mod/align.py   biskit(Download)
import Biskit.tools as tools
from Biskit import EHandler
from Biskit import LogFile
 
import sys, os.path
log = None
if options['log']:
    log = LogFile( outFolder + '/' + options['log'], 'a' )
 
if not (os.path.exists( outFolder +'/templates' ) ):

src/b/i/biskit-2.4/Biskit/Mod/Aligner.py   biskit(Download)
    def prepare(self):
        import tempfile
        import shutil, stat
        from Biskit import LogFile, StdLog
 
 
        if not self.local:
            self.a_log = LogFile( self.outfolder + '/Aligner.log' )
        else:
            self.a_log = StdLog()

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