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src/b/i/biskit-2.4/Biskit/Dock/ContactSlave.py   biskit(Download)
import Biskit.tools as T
from Biskit import mathUtils as MU
from Biskit.LogFile import StdLog, LogFile
import numpy.oldnumeric as N
from Complex import Complex
        """
        self.ferror = params['ferror']
        self.log    = StdLog()
        if params['log']:        ## log to same file as master
            self.log = LogFile( self.flog )

src/b/i/biskit-2.4/Biskit/AmberParmBuilder.py   biskit(Download)
import Biskit.settings as s
import Biskit.mathUtils as MU
from Biskit.LogFile import LogFile, StdLog
from Biskit.PDBModel import PDBModel
from Biskit.Errors import BiskitError
        self.leap_out= leap_out
 
        self.log = log or StdLog()
 
        self.output = None   # last output of leap

src/b/i/biskit-2.4/Biskit/PDBCleaner.py   biskit(Download)
import Biskit.tools as t
from Biskit.PDBModel import PDBModel
from Biskit.LogFile import StdLog
 
import numpy.oldnumeric as N
        """
        self.model = PDBModel( fpdb )
        self.log = log or StdLog()
        self.verbose = verbose
 

src/b/i/biskit-2.4/Biskit/Executor.py   biskit(Download)
import Biskit.tools as t
import Biskit.settings as s
from Biskit.LogFile import StdLog
from Biskit.Errors import BiskitError
from Biskit.ExeConfigCache import ExeConfigCache
 
        #: Log object for own messages
        self.log = log or StdLog()
        self.verbose = verbose
        if self.verbose is None:

src/b/i/biskit-2.4/Biskit/Dock/ContactMaster.py   biskit(Download)
from Biskit.PDBModel import PDBProfiles
from Biskit.Errors import BiskitError
from Biskit.LogFile import StdLog
from Biskit import EHandler