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src/b/i/biskit-2.4/scripts/Mod/modelling_example.py   biskit(Download)
 
    ## local Blast
    searcher.localBlast( f_target, seq_db, 'blastp', alignments=500, e=0.0001 )
 
    ## cluster blast results. Defaults: simCut=1.75, lenCut=0.9, ncpu=1
    searcher = TemplateSearcher( outFolder, verbose=1, log=log )
 
    searcher.localBlast(f_target, tmp_db, 'blastp', alignments=200, e=0.001)
 
    searcher.retrievePDBs()

src/b/i/biskit-2.4/scripts/Mod/model_for_docking.py   biskit(Download)
 
    ## local Blast
    searcher.localBlast( f_target, seq_db, 'blastp', alignments=500, e=0.0001 )
 
    ## cluster blast results. Defaults: simCut=1.75, lenCut=0.9, ncpu=1
    searcher = TemplateSearcher( outFolder, verbose=1 )
 
    searcher.localBlast(f_target, tmp_db, 'blastp', alignments=200, e=0.001)
 
    searcher.retrievePDBs()