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src/b/i/biskit-2.4/Biskit/Mod/TemplateCleaner.py   biskit(Download)
import Biskit.tools as T
from Biskit import PDBModel, PDBCleaner, CleanerError
from TemplateSearcher import TemplateSearcher
                ## clean to standard PDB
                c = PDBCleaner( f, self.log )
                ## if /templates/nr_cleaned/pfb-file exists

src/b/i/biskit-2.4/Biskit/reduce.py   biskit(Download)
import numpy as N
from Biskit import Executor, PDBModel, PDBCleaner
import Biskit.tools as T
    def capTerminals( self ):
        c = PDBCleaner( self.model )
        self.model = c.capTerminals( auto=self.autocap, 
                                     capN=self.capN, capC=self.capC )