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src/b/i/biskit-2.4/Biskit/Dock/ContactMaster.py   biskit(Download)
import Biskit.mathUtils as MU
import Biskit.settings as settings
from Biskit.PDBDope import PDBDope
from Biskit.PDBModel import PDBProfiles
from Biskit.Errors import BiskitError
        for m in cl.recModels():
            if not m.profile('surfMask', 0) != 0:
                d = PDBDope( m )
                d.addSurfaceMask()
 
        for m in cl.ligModels():
            if not m.profile('surfMask', 0) != 0:
                d = PDBDope( m )
            return 
 
        d = PDBDope( m )
        d.addSurfaceRacer()
 

src/b/i/biskit-2.4/scripts/Biskit/dope.py   biskit(Download)
import Biskit.tools as T
from Biskit.PDBModel import PDBModel
from Biskit.PDBDope import PDBDope
 
import Biskit.LocalPath
        source = source.sort()
 
    doper = PDBDope( source )
 
    if surf:
    if model.xyzChanged:
 
        doper = PDBDope( model )
 
        if 'MS' in sourceModel.atoms.keys():

src/b/i/biskit-2.4/scripts/Biskit/averageASA.py   biskit(Download)
import os, os.path
import numpy.oldnumeric as N
from Biskit.PDBDope import PDBDope
from Biskit.PDBModel import PDBModel
import time, sys
            ## add surface data
            try:
                d = PDBDope( m )
                d.addSurfaceRacer( probe=1.4 )
 

src/b/i/biskit-2.4/Biskit/Ramachandran.py   biskit(Download)
from Biskit import ColorSpectrum as CS
from Biskit.MatrixPlot import Legend
from Biskit.PDBDope import PDBDope 
from Biskit import EHandler
 
        """
        if self.verbose: print "Initiating PDBDope..."
        d = PDBDope( m )
 
        if not self.profileName in m.atoms.keys():