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src/b/i/biskit-2.4/Biskit/surfaceRacerTools.py   biskit(Download)
        ## load a structure
        self.m = PDBModel( T.testRoot()+'/lig/1A19.pdb' )
        self.m = self.m.compress( self.m.maskProtein() )
        self.m = self.m.compress( self.m.maskHeavy() )
 

src/b/i/biskit-2.4/Biskit/DSSP.py   biskit(Download)
        if self.local: print 'Loading PDB...'
        self.m = PDBModel(self.f)
        self.m = self.m.compress( self.m.maskProtein() )
 
        if self.local:  print 'Starting DSSP'

src/b/i/biskit-2.4/Biskit/Prosa2003.py   biskit(Download)
        ## Loading PDB...
        self.ml = PDBModel( T.testRoot()+'/lig/1A19.pdb' )
        self.ml = self.ml.compress( self.ml.maskProtein() )
 
        self.mr = PDBModel( T.testRoot()+'/rec/1A2P.pdb' )
        self.mr = self.mr.compress( self.mr.maskProtein() )

src/b/i/biskit-2.4/Biskit/PDBDope.py   biskit(Download)
 
        self.M = PDBModel( self.f )
        self.M = self.M.compress( self.M.maskProtein() )
 
        self.d = PDBDope( self.M )
 
        self.M = PDBModel( self.f )
        self.M = self.M.compress( self.M.maskProtein() )
 
        self.d = PDBDope( self.M )

src/b/i/biskit-2.4/Biskit/msms.py   biskit(Download)
        if self.local: print 'Loading PDB...'
        self.m = PDBModel( T.testRoot() + '/lig/1A19.pdb' )
        self.m = self.m.compress( self.m.maskProtein() )
 
        if self.local: print 'Getting surfaces via the MSMS executable'

src/b/i/biskit-2.4/Biskit/molTools.py   biskit(Download)
        ## Loading PDB...
        self.m = PDBModel( T.testRoot() + '/lig/1A19.pdb' )
        self.m = self.m.compress( self.m.maskProtein() )
 
        hb = hbonds( self.m )

src/b/i/biskit-2.4/Biskit/IcmCad.py   biskit(Download)
        self.f = T.testRoot() + '/lig/1A19.pdb'
        self.m1 = PDBModel(self.f)
        self.m1 = self.m1.compress( self.m1.maskProtein() )
 
        self.ms = []

src/b/i/biskit-2.4/Biskit/Hmmer.py   biskit(Download)
            if self.local: print "Loading PDB...",
            self.M = PDBModel( T.testRoot()+'/lig/1A19.pdb')
            self.M = self.M.compress( self.M.maskProtein() )
            if self.local: print "Done"
 

src/b/i/biskit-2.4/Biskit/Fold_X.py   biskit(Download)
        ## Loading PDB...
        self.m = PDBModel( T.testRoot() + '/rec/1A2P.pdb' )
        self.m = self.m.compress( self.m.maskProtein() )
 
        ## Starting fold_X