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src/b/i/biskit-2.4/scripts/Biskit/amber_ensembleMD.py   biskit(Download)
 
        if dry_out:
            m.remove( m.maskH2O() )
            m.writePdb( dry_out )
        flushPrint('done.\n')

src/b/i/biskit-2.4/scripts/Dock/pdb2complex.py   biskit(Download)
ref_com =  PDBModel( options['c'] )
print "Removing water..."
ref_com.remove( lambda a: a['residue_name'] in ['TIP3','HOH','WAT'] )
 
## extract rec and lig chains

src/b/i/biskit-2.4/Biskit/atomCharger.py   biskit(Download)
 
        self.m3 = PDBModel(self.m1.clone())
        self.m3.remove( [0,3,100,101,102,200] )
        ac.charge( self.m3 )