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src/b/i/biskit-2.4/scripts/Mod/analyse.py   biskit(Download)
        p=Pymoler()
        p.addPdb( folders[0] + a.F_FINAL_PDB )
        p.add('color_b')
        p.add('select na, b<0')
        p.add('color grey, na')
        p.add('hide all')
        p.add('show cartoon')

src/b/i/biskit-2.4/Biskit/Dock/Complex.py   biskit(Download)
            self.pm.colorAtoms( 'lig_sphere', contProfile_lig )
 
            self.pm.add( 'hide all')
 
            self.pm.add( 'color grey, (b=0)' )
            self.pm.add( 'show stick, (rec or lig)' )
            self.pm.add( 'show surf, rec_sphere')
 
            self.pm.add( 'zoom all' )

src/b/i/biskit-2.4/scripts/Biskit/pdb2xplor.py   biskit(Download)
        pm = Pymoler( )
        mname = pm.addPdb( xplorer.outname + '.pdb' )
        pm.add('select xray-wat, segi 1XWW')
        pm.add('select added-wat, segi 1WWW')
        pm.add('select hydrogens, elem H')
        pm.add('hide everything, xray-wat OR added-wat OR hydrogens')
        pm.add('select none')

src/b/i/biskit-2.4/Biskit/Dock/Intervor.py   biskit(Download)
            pm.colorAtoms( 'water', water[profile] )
 
        pm.add( 'hide' )
        pm.add( 'show surface, rec' )
        pm.add( 'show mesh, lig' )
        pm.add( 'show spheres, x-water' )
        pm.add( 'show spheres, water' )

src/b/i/biskit-2.4/Biskit/Dock/ComplexRandomizer.py   biskit(Download)
 
        mname = self.pm.addMovie( [ traj[i] for i in range(len(traj)) ] )
        self.pm.add('hide all')
        self.pm.add('show cartoon')
        self.pm.add('spectrum')
        self.pm.add('mplay')

src/b/i/biskit-2.4/Biskit/Mod/Benchmark.py   biskit(Download)
            pm.addPdb( reference, "r" )
            pm.colorAtoms( "m", tmp_model.profile("rms_outliers") )
            pm.add('set ribbon_trace,1')
            pm.add('show ribbon')
            pm.show()