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src/b/i/biskit-2.4/Biskit/Dock/Complex.py   biskit(Download)
            self.pm.addPdb( c.lig(), 'lig' )
 
            self.pm.colorAtoms( 'rec', contProfile_rec )
            self.pm.colorAtoms( 'lig', contProfile_lig )
 
            self.pm.addPdb( lig_sphere, 'lig_sphere' )
 
            self.pm.colorAtoms( 'rec_sphere', contProfile_rec )
            self.pm.colorAtoms( 'lig_sphere', contProfile_lig )
 

src/b/i/biskit-2.4/Biskit/Dock/Intervor.py   biskit(Download)
        pm.addPdb( lig, 'lig' )
 
        pm.colorAtoms( 'rec', rec[profile])
        pm.colorAtoms( 'lig', lig[profile])
 
        if xwater:
            pm.addPdb( xwater, 'x-water' )
            pm.colorAtoms( 'x-water', xwater[profile] )
        if water:
            pm.addPdb( water, 'water' )
            pm.colorAtoms( 'water', water[profile] )
 
        pm.add( 'hide' )

src/b/i/biskit-2.4/Biskit/Mod/Benchmark.py   biskit(Download)
            pm.addPdb( pdb, "m" )
            pm.addPdb( reference, "r" )
            pm.colorAtoms( "m", tmp_model.profile("rms_outliers") )
            pm.add('set ribbon_trace,1')
            pm.add('show ribbon')