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src/b/i/biskit-2.4/Biskit/Dock/delphiBindingEnergy.py   biskit(Download)
from Biskit import Delphi, DelphiError
from Biskit import StdLog
from Biskit import Reduce, AtomCharger
from Biskit.Dock import Complex
 
                tempdir += '/0_reduce'
 
            r = Reduce( m, tempdir=tempdir, log=self.log,
                        autocap=False,
                        debug=self.debug, verbose=self.verbose )

src/b/i/biskit-2.4/Biskit/atomCharger.py   biskit(Download)
from Biskit import PDBModel, StdLog
from Biskit import AmberResidueLibrary
from Biskit import Reduce
import Biskit.mathUtils as MA
 
 
        if self.local: self.log.add('\nRunning Reduce...')
        self.x = Reduce( self.m1, debug=self.DEBUG, verbose=self.local,
                         log=self.log,
                         autocap=True )
        self.m1 = self.x.run()
 
        if self.local:
            self.log.add('\nReduce protein complex')
        self.x = Reduce( self.m2, debug=self.DEBUG, verbose=self.local,