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src/b/i/biskit-2.4/scripts/Mod/model.py   biskit(Download)
    models =  glob.glob( '%s/target.B*'%(m8.outFolder + m8.F_RESULT_FOLDER) )
    traj = Trajectory( models )
    traj.blockFit2ref( mask=traj[0].maskBB() )
 
    ## calculate and print rmsd matrix
    ## same thing for backbone atoms
    BBMask = traj[0].maskBB()
    traj.blockFit2ref( mask = BBMask )
    rmsBB = traj.pairwiseRmsd( aMask = BBMask  )
    print '\nBACKBONE RMSD BETWEEN MODELS:'