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src/b/i/biskit-2.4/scripts/Mod/model.py   biskit(Download)
 
    ## calculate and print rmsd matrix
    rmsHeavy = traj.pairwiseRmsd()
    print '\nHEAVY ATOM RMSD BETWEEN MODELS::'
    __printMatrix( rmsHeavy )
 
    ## same thing for backbone atoms
    BBMask = traj[0].maskBB()
    traj.blockFit2ref( mask = BBMask )
    rmsBB = traj.pairwiseRmsd( aMask = BBMask  )