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src/b/i/biskit-2.4/Biskit/AmberEntropist.py   biskit(Download)
        for i in range( len( all ) ):
            for j in range( i, len(all) ):
                pw[i,j] = pw[j,i] = len( MU.intersection(all[i],all[j]) )**2
 
        pos = 0