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src/b/i/biskit-2.4/Biskit/Dock/ContactMaster.py   biskit(Download)
        ## reference residue contacts
        cont_4_5 = RC.resContacts( cutoff=4.5, refComplex = NC, cache_pw=1 )
        self.c_ref_res_4_5 = MU.packBinaryMatrix( cont_4_5 )
 
        cont_10 = RC.resContacts( cutoff=10., refComplex= NC, cache_pw=1 )
 
        ## reference atom contacts
        m = RC.atomContacts( 4.5, cache=1, map_back=0)
        self.c_ref_atom_4_5 = MU.packBinaryMatrix( m )
 
        m = RC.atomContacts( 10., cache=1, map_back=0)
        self.c_ref_atom_10  = MU.packBinaryMatrix( m )
 
        ## reference structure of contacting residues all atoms, cutoff 4.5
        x, y = self.__ref_interface( RC, NC, cont_4_5,
                                     self.mask_rec, self.mask_lig )
        self.mask_interface      = MU.packBinaryMatrix( x )
        x, y = self.__ref_interface( RC, NC, cont_10,
                                     self.mask_rec, self.mask_lig, bb=1 )
        self.mask_interface_bb      = MU.packBinaryMatrix( x )
        self.ref_interface_model_bb = y
 

src/b/i/biskit-2.4/Biskit/Dock/ContactSlave.py   biskit(Download)
 
            if self.requested(c, 'c_ratom_10'):
                c['c_ratom_10'] = MU.packBinaryMatrix(contacts)
 
            if self.c_ref_ratom_10 is not None: