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src/b/i/biskit-2.4/Biskit/AmberEntropist.py   biskit(Download)
        remaining = MU.difference( range( n_members ), excluded )
        tripple = self.tripples( remaining, trippleIndex+1 )[-1]
        return MU.union( excluded, list(tripple) )
 
 

src/b/i/biskit-2.4/Biskit/AmberParmBuilder.py   biskit(Download)
            if cap:
                end_broken = m.atom2chainIndices( m.chainBreaks() )
                capC = MU.union( capC, end_broken )
                capN = MU.union( capN, N.array( end_broken ) + 1 )
 

src/b/i/biskit-2.4/Biskit/AmberEntropyMaster.py   biskit(Download)
                     ( len(outliers), self.zfilter ) )
 
        return MU.union( outliers, outlaws )
 
 

src/b/i/biskit-2.4/Biskit/PDBCleaner.py   biskit(Download)
            end_broken = m.atom2chainIndices( m.chainBreaks(), breaks=1 )
 
            capC = M.union( capC, end_broken )
            capN = M.union( capN, N.array( end_broken ) + 1 )
 

src/b/i/biskit-2.4/Biskit/PDBParseFile.py   biskit(Download)
                                                      headPatterns )
 
                keys = M.union( atoms.keys(),  self.DEFAULTS.keys() )
 
                for k in keys: