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src/b/i/biskit-2.4/scripts/Biskit/traj2ensemble.py   biskit(Download)
 
T.flushPrint( "Done\nDumping ensemble traj to " + o['o'] )
T.dump( result, T.absfile( o['o'] ) )
 

src/b/i/biskit-2.4/scripts/Dock/pdb2complex.py   biskit(Download)
ref_rec.saveAs( T.absfile( options['ro'] ) )
 
T.dump( com, T.absfile( options['o']) )
 

src/b/i/biskit-2.4/Biskit/LocalPath.py   biskit(Download)
        try:
            f = self.local()
            T.dump( f, o )
            return f
        except:

src/b/i/biskit-2.4/scripts/Biskit/relocalize.py   biskit(Download)
            f_bak = f + '__old'
            os.rename( f, f_bak )
            tools.dump( o, f )
            print "..done"
        else:

src/b/i/biskit-2.4/scripts/analysis/a_trajEntropy.py   biskit(Download)
a.run()
 
t.dump( a.result, options['o'] )
 
print "Dumped detailed result to %s. (for python unpickling)" % options['o']

src/b/i/biskit-2.4/Biskit/Mod/Benchmark.py   biskit(Download)
        """
        output_file = output_file or self.outFolder + self.F_PDBModels_OUT
        T.dump(pdb_list, '%s'%(output_file))
 
 

src/b/i/biskit-2.4/scripts/Biskit/replacePath.py   biskit(Download)
#!/usr/bin/env python
import sys
from Biskit import LocalPath, PDBModel, Trajectory
from Biskit.Dock import Complex, ComplexList
from Biskit.tools import load, dump, absfile
        if isinstance( o, ComplexList): o = replace_in_ComplexList(o,old,new)
 
        dump( o, f )
        print
 

src/b/i/biskit-2.4/Biskit/Mod/Modeller.py   biskit(Download)
            m.disconnect()
 
        T.dump(pdb_list, '%s'%(model_folder + self.F_PDBModels))
 
 

src/b/i/biskit-2.4/Biskit/Dock/ContactSlave.py   biskit(Download)
            fname = self.ferror + '_dat'
            if not os.path.exists( fname ):
                T.dump( o, fname )
        except Exception, why:
            f = open('ErrorReportError_ContactSlave','a')

src/b/i/biskit-2.4/Biskit/Dock/ContactMaster.py   biskit(Download)
 
        if self.verbose: print "\nSaving result to %s..." % self.outFile
        t.dump( self.complexLst, self.outFile )
 
        self.finished = 1

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