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src/b/i/biskit-2.4/Biskit/Hmmer.py   biskit(Download)
                  'Hmmersearch result file %s does not exist.'%self.f_out
 
        if T.fileLength( self.f_out ) < 10:
            raise HmmerError,\
                  'Hmmersearch result file %s seems incomplete.'%self.f_out 
                  'Hmmerfetch result file %s does not exist.'%self.f_out
 
        if T.fileLength( self.f_out ) < 10:
            raise HmmerError,\
                  'Hmmerfetch result file %s seems incomplete.'%self.f_out
        self.fastaFile = fastaFile
 
        assert T.fileLength( self.hmmFile ) > 10, \
               'input HMM file missing or empty'
 
                  'Hmmeralign result file %s does not exist.'%self.f_out
 
        if T.fileLength( self.f_out ) < 1:
            raise HmmerError,\
                  'Hmmeralign result file %s seems incomplete.'%self.f_out

src/b/i/biskit-2.4/Biskit/Mod/SequenceSearcher.py   biskit(Download)
        fastaIn = fastaIn or self.outFolder + self.F_FASTA_ALL
 
        if T.fileLength( fastaIn ) < 1:
            raise IOError( "File %s empty. Nothing to cluster"%fastaIn )