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src/b/i/biskit-2.4/scripts/Biskit/amber_pdb2parm.py   biskit(Download)
 
    options['cap'] = 'cap' in options
    options['capN']= t.toIntList( options.get('capN',[]))
    options['capC']= t.toIntList( options.get('capC',[]))
    options['hetatm'] = 'hetatm' in options

src/b/i/biskit-2.4/scripts/Dock/pdb2complex.py   biskit(Download)
 
## extract rec and lig chains
rec_chains = T.toIntList( options['r'] )
lig_chains = T.toIntList( options['l'] )
 

src/b/i/biskit-2.4/scripts/Dock/delphiBinding.py   biskit(Download)
 
    ## extract rec and lig chains
    rec_chains = T.toIntList( options['r'] )
    lig_chains = T.toIntList( options['l'] )
 

src/b/i/biskit-2.4/scripts/analysis/a_trajEntropy.py   biskit(Download)
for k in ['chains','ex1', 'ex2', 'ex']:
    if k in options:
        options[k] = t.toIntList( options[k] )
 
if 'atoms' in options:

src/b/i/biskit-2.4/scripts/analysis/a_comEntropy.py   biskit(Download)
for k in [ 'cr', 'exrec', 'exlig', 'excom']:
    if k in options:
        options[k] = t.toIntList( options[k] )
 
if 'atoms' in options:

src/b/i/biskit-2.4/scripts/analysis/a_report_comEntropy.py   biskit(Download)
            s += self.table_header()
 
        vpos = T.toIntList( vpos or range( len( d['dS'] ) ) )
 
        for i in vpos: