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src/b/i/biskit-2.4/scripts/Mod/benchmark.py   biskit(Download)
 
    if options.has_key('d'):
        folders = T.toList(options['d'])
    else: 
        folders = d

src/b/i/biskit-2.4/scripts/analysis/a_trajEntropy.py   biskit(Download)
 
if 'atoms' in options:
    options['atoms'] = t.toList( options['atoms'] )
 
if 'ex1' in options and 'ex2' in options:

src/b/i/biskit-2.4/scripts/analysis/a_compare_rms_vs_fnc.py   biskit(Download)
    ## Load complex dictionary
    c_lst = T.load( options['i'] )
    pkeys = T.toList( options['v'] )
    keys =  [ 'soln', 'rms', 'rms_if', 'rms_if_bb' ] + pkeys
 

src/b/i/biskit-2.4/scripts/Mod/setup_validation.py   biskit(Download)
        _use( options )
 
    folders = T.toList( options['o'] )
 
    if not os.path.exists( folders[0] +'/templates'):

src/b/i/biskit-2.4/scripts/Mod/analyse.py   biskit(Download)
 
    if options.has_key('d'):
        folders = T.toList(options['d'])
    else: 
        folders = d

src/b/i/biskit-2.4/scripts/Biskit/pdb2model.py   biskit(Download)
    else:
    ## extract file names
        files = T.toList( options['i'] )
 
    ## add needed amount of hosts 

src/b/i/biskit-2.4/scripts/analysis/a_comEntropy.py   biskit(Download)
 
if 'atoms' in options:
    options['atoms'] = t.toList( options['atoms'] )
 
if 'single' in options:

src/b/i/biskit-2.4/scripts/Mod/model_parallel.py   biskit(Download)
        _use( options )
 
    folders = T.toList(options['d'])
    hostNumber = int(options['h'])
    fastaTarget = options.get('fta', None)

src/b/i/biskit-2.4/scripts/Mod/align_parallel.py   biskit(Download)
        _use( options )
 
    folders = T.toList(options['d'])
    hostNumber = int(options['h'])
    pdbFolder = options.get('pdb', None)

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